Example mtree dataset.

Example mtree dataset.

data(mtree_input)

Format

A list of parameters to build a mutation tree.

Examples

data(mtree_input)
mtree_input
#> $samples
#> [1] "PD9193d" "PD9193e" "PD9193f" "PD9193g" "PD9193h" "PD9193i" "PD9193j"
#> [8] "PD9193k"
#> 
#> $drivers
#> # A tibble: 4 x 15
#>   Misc  patientID variantID cluster is.driver is.clonal PD9193d PD9193e PD9193f
#>   <chr> <chr>     <chr>     <chr>   <lgl>     <lgl>       <dbl>   <dbl>   <dbl>
#> 1 cuto… PD9193    SMARCA4   3       TRUE      FALSE           1       0       0
#> 2 cuto… PD9193    GATA3     1       TRUE      TRUE            1       1       1
#> 3 cuto… PD9193    +8q       4       TRUE      FALSE           1       0       1
#> 4 cuto… PD9193    -8p       4       TRUE      FALSE           1       0       1
#> # … with 6 more variables: PD9193g <dbl>, PD9193h <dbl>, PD9193i <dbl>,
#> #   PD9193j <dbl>, PD9193k <dbl>, nMuts <dbl>
#> 
#> $sspace.cutoff
#> [1] 10000
#> 
#> $n.sampling
#> [1] 5000
#> 
#> $store.max
#> [1] 100
#> 
#> $patient
#> [1] "PD9193"
#> 
#> $binary_clusters
#> # A tibble: 4 x 14
#>   Misc  patientID cluster is.driver is.clonal PD9193d PD9193e PD9193f PD9193g
#>   <chr> <chr>     <chr>   <lgl>     <lgl>       <dbl>   <dbl>   <dbl>   <dbl>
#> 1 cuto… PD9193    2       FALSE     FALSE           1       1       1       0
#> 2 cuto… PD9193    3       TRUE      FALSE           1       0       0       0
#> 3 cuto… PD9193    1       TRUE      TRUE            1       1       1       1
#> 4 cuto… PD9193    4       TRUE      FALSE           1       0       1       1
#> # … with 5 more variables: PD9193h <dbl>, PD9193i <dbl>, PD9193j <dbl>,
#> #   PD9193k <dbl>, nMuts <dbl>
#>