Analysis of colorectal adenocarcinomas
Frequently Asked Questions
Input formats and creation of a REVOLVER cohort
Re-coding of all the internal structure of the cohorts using tibbles and in general the tidy data paradigm;
New interface to access the data, based on ad hoc getter functions;
All plotting functions have been re-implemented using ggplot to gain more flexibility, and remove the PDF jamming routines;
Clone trees from CCF data have been extracted and included in a new dedicated package
file to track changes to the package.
Bugs fixing, and removal of the actual code taken from CloneEvol to increase clarity and improve performance.
jamPDF is now associated to an option (default = FALSE) to increase compatibility with MS Windows systems.
Released the first version of the tool, together with the paper PMID: 30171232.